Publikasi Anak Bangsa

Beberapa paper hasil publikasi putra-putri Indonesia di bidang Bioteknologi Tanaman ditampilkan di halaman ini. Sebagai bukti bahwa kita mampu bicara di kancah internasional.

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Tahun 2010

1. Indrasumunar A and Gresshoff PM. (2010) Duplicated nod-factor receptor 5 (NRF5) genes are mutated in soybean (Glycine max L. Merr.). Plant Signal Behav 5(5):
2. Priyono, Florin B, Rigoreau M, Ducos JP, Sumirat U, Mawardi S, Lambot C, Broun P, Petiard V, Wahyudi T, Crouzillat D. (2010) Somatic embryogenesis and vegetative cutting capacity are under distinct genetic control in  Coffea canephora Pierre. Plant Cell Rep 29(4): 343-357.
3. Indrasumunar A, Kereszt A, Searle I, Miyagi M, Li D, Nguyen CD, Men A, Carroll BJ, Gresshoff PM. (2010) Inactivation of duplicated nod factor receptor 5 (NFR5) genes in recessive loss-of-function non-nodulation mutants of allotetraploid soybean (Glycine max L. Merr.). Plant Cell Physiol 51(2): 201-214.
4. Ferguson BJ, Indrasumunar A, Hayashi S, Lin MH, Lin YH, Reid DE, Gresshoff PM. (2010) Molecular analysis of legume nodule development and autoregulation. J Integr Plant Biol 52(1): 61-76.

Tahun 2009

1. Wijayanto T, Barker SJ, Wylie SJ, Gilchrist DG and Cowling WA. (2009) Significant reduction of fungal disease symptoms in transgenic lupin (Lupinus angustifolius) expressing the anti-apoptotic baculovirus gene p35. Plant Biotechnol J 7(8): 778-790.
2. Ardie SW, Xie L, Takahashi R, Liu S and Takano T. (2009) Cloning of a high-affinity K+ transporter gene PutHKT2;1 from Puccinellia tenuiflora and its functional comparison with OsHKT2;1 from rice in yeast and Arabidopsis. J Exp Bot 60(12): 3491-3502. 
3. Lestari P, Ham TH, Lee HH, Woo MO, Jiang W, Chu SH, Kwon SW, Ma K, Lee JH, Cho YC, Koh HJ. (2009) PCR Marker-Based Evaluation of the Eating Quality of Japonica Rice (Oryza sativa L.). J Agric Food Chem 57(7): 2754–2762.

Tahun 2008

1. Hartati S, Sudarmonowati E, Park YW, Kaku T, Kaida R, Baba K, Hayashi T. (2008) Overexpression of poplar cellulase accelerates growth and disturbs the closing movements of leaves in sengon. Plant Physiol 147(2): 552-61.
2. Agalou A, Purwantomo S, Övernäs E, Johannesson H, Zhu X, Estiati A, de Kam RJ, Engström P, Slamet-Loedin IH, Zhu Z, Wang M, Xiong L, Meijer AH and Ouwerkerk PBF. (2008) A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members. Plant Mol Biol 66: 87–103.
3. Gyves EM, Mira FR, Ruiu F and Rugini E. (2008) Stimulation of node and lateral shoot formation in micropropagation of olive (Olea europaea L.) by using dikegulac. Plant Cell Tiss Organ Cult 92:233–238.
4. Supena EDJ, Winarto B, Riksen T, Dubas E, van Lammeren A, Offringa R, Boutilier K and Custers J. (2008) Regeneration of zygotic-like microspore-derived embryos suggests an important role for the suspensor in early embryo patterning. J Exp Bot 59(4):803-814.

Tahun 2007

1. Iwakawa H, Iwasaki M, Kojima S, Ueno Y, Soma T, Tanaka H, Semiarti E, Machida Y and Machida C. (2007) Expression of the ASYMMETRIC LEAVES2 gene in the adaxial domain of Arabidopsis leaves represses cell proliferation in this domain and is critical for the development of properly expanded leaves. Plant J 51: 173–184.
2. Joosen R, Cordewener J, Supena EDJ, Vorst C, Lammers M, Maliepaard C, Zeilmaker T, Miki B, America T, Custers J and Boutilier K. (2007) Combined transcriptome and proteome analysis identifies pathways and markers associated with the establishment of rapeseed microspore-derived embryo development. Plant Physiol 144: 155–172.
3. Sudarmono and Okada H. (2007) Speciation process of Salvia isensis (Lamiaceae), a species endemic to serpentine areas in the Ise-Tokai district, Japan, from the viewpoint of the contradictory phylogenetic trees generated from chloroplast and nuclear DNA. J Plant Res 120: 483–490.
4. Abas Y, Touil N, Kirsch-Volders M, Angenon G, Jacobs M and Famelaer IDH. (2007) Evaluation of UV damage at DNA level in Nicotiana plumbaginifolia protoplasts using single cell gel electrophoresis. Plant Cell Tiss Organ Cult 91:145–154.
5. Telgmann-Rauber A, Jamsari A, Kinney MS, Pires JC and Jung C. (2007) Genetic and physical maps around the sex-determining M-locus of the dioecious plant asparagus. Mol Genet Genomics 278:221–234.
6. auf’m Erleya GS, Wijaya KA, Ulasa A, Beckerc H, Wieslerd F and Horst WJ. (2007) Leaf senescence and N uptake parameters as selection traits for nitrogen efficiency of oilseed rape cultivars. Physiol Planta 130: 519–531.
7. Srinivasan C, Liu Z, Heidmann I, Supena EDJ, Fukuoka H, Joosen R,  Lambalk J, Angenent G, Scorza R, Custers JBM and Boutilier K. (2007) Heterologous expression of the BABY BOOM AP2/ERF transcription factor enhances the regeneration capacity of tobacco (Nicotiana tabacum L.). Planta 225:341–351.
8. Santosa IE, Ram PC, Boamfa EI, Laarhoven LJJ, Reuss J, Jackson MB and Harren FJM. (2007) Patterns of peroxidative ethane emission from submerged rice seedlings indicate that damage from reactive oxygen species takes place during submergence and is not necessarily a post-anoxic phenomenon. Planta (2007) 226:193–202.
9. Thomson MJ, Septiningsih EM, Suwardjo F, Santoso TJ, Silitonga TS and McCouch SR. (2007) Genetic diversity analysis of traditional and improved Indonesian rice (Oryza sativa L.) germplasm using microsatellite markers. Theor Appl Genet 114:559–568.
10. Chaerani R, Smulders MJM, van der Linden CG, Vosman B, Stam P and Voorrips RE. (2007) QTL identification for early blight resistance (Alternaria solani) in a Solanum lycopersicum x S. arcanum cross. Theor Appl Genet 114:439–450.
11. Semiarti E, Indrianto A, Purwantoro A, Isminingsih S, Suseno N, Ishikawa T, Yoshioka Y, Machida Y and Machida C. (2007) Agrobacterium-mediated transformation of the wild orchid species. Phalaenopsis amabilis. Plant Biotech 24: 265-272.

Tahun 2006

1. Lestari P, Van K, Kim MY, Lee BW, Lee SH. (2006) Newly featured infection events in a supernodulating soybean mutant SS2-2 by Bradyrhizobium japonicum. Can J Microbiol 52(4): 328-35.
2. Kon T, Hidayat SH, Hase S, Takahashi H, Ikegami M. (2006) The Natural Occurrence of Two Distinct Begomoviruses Associated with DNAβ and a Recombinant DNA in a Tomato Plant from Indonesia. Phytopathol 96(5): 517-25.
3. Cao CP, Gailing O, Siregar I, Indrioko S and Finkeldey R. (2006) Genetic variation at AFLPs for the Dipterocarpaceae and its relation to molecular phylogenies and taxonomic subdivisions. J Plant Res 119: 553–558.
4. Supena EDJ, Suharsono S, Jacobsen E and Custers JBM. (2006) Successful development of a shed-microspore culture protocol for doubled haploid production in Indonesian hot pepper (Capsicum annuum L.). Plant Cell Rep 25: 1–10.
5. Sulistyaningsih E, Aoyagi Y and Tashiro Y. (2006) Flower bud culture of shallot (Allium cepa L. Aggregatum group) with cytogenetic analysis of resulting gynogenic plants and somaclones. Plant Cell Tiss Organ Cult 86:249–255.
6. Supanjani S, Lee KD, Almaraz JJ, Zhou X and Smith DL. (2006) Effect of organic N source on bacterial growth, lipo-chitooligosaccharide production, and early soybean nodulation by Bradyrhizobium japonicum. Can. J. Microbiol 52: 227–236.

Tahun 2000 – 2005

1. Purnobasuki H and Suzuki M. (2005) Aerenchyma tissue development and gas-pathway structure in root of Avicennia marina (Forsk.) Vierh. J Plant Res 118: 285–294.
2. Hidayat T, Yukawa T and Ito M. (2005) Molecular phylogenetics of subtribe Aeridinae (Orchidaceae): insights from plastid matK and nuclear ribosomal ITS sequences. J Plant Res 118: 271–284.
3. Chikmawati T, Skovmand B and Gustafson JP. (2005) Phylogenetic relationships among Secale species revealed by amplified fragment length polymorphisms. Genome 48: 792–801.
4. Frank W, Ratnadewi D and Reski R. (2005) Physcomitrella patens is highly tolerant against drought, salt and osmotic stress. Planta (2005) 220: 384–394.
5. Billotte N, Marseillac N, Risterucci AM, Adon B, Brottier P, Baurens FC, Singh R, Herra´n A, Asmady H, Billot C, Amblard P, Durand-Gasselin T, Courtois B, Asmono D, Cheah SC, Rohde W, Ritter E and Charrier A. (2005) Microsatellite-based high density linkage map in oil palm (Elaeis guineensis Jacq.). Theor Appl Genet 110: 754–765.
6. Rahayu YS, Walch-Liu P, Neumann G, Ro¨mheld V, von Wire´n N and Bangerth F. (2005) Root-derived cytokinins as long-distance signals for NO₃^--induced stimulation of leaf growth. J Exp Bot 56(414): 1143–1152.
7. Miftahudin, Chikmawati T, Ross K, Scoles GJ and Gustafson JP. (2005) Targeting the aluminum tolerance gene Alt3 region in rye, using rice/rye micro-colinearity. Theor Appl Genet 110: 906–913.
8. Zheng SJ, Henken B, de Maagd RE, Purwito A, Krens FA and Kik C. (2005) Two different Bacillus thuringiensis toxin genes confer resistance to beet armyworm (Spodoptera exigua Hu¨bner) in transgenic Bt-shallots (Allium cepa L.). Transgen Res (2005) 14:261–272.
9. Dresselhausa T, Amien S, Mártona M, Streckea A, Brettschneider R and Cordtsa S. (2005) , TRANSPARENT LEAF AREA1 Encodes a Secreted Proteolipid Required for Anther Maturation, Morphogenesis, and Differentiation during Leaf Development in Maize. Plant Cell 17: 730–745.
10. Santosa DA, Hendroko R, Farouk A and Greiner R. (2004) A Rapid and Highly Efficient Method for Transformation of Sugarcane Callus. Mol Biotechnol 28(2): 113-119.
11. Rachmawati D, Hosaka T, Inoue E and Anzai H. (2004) Agrobacterium-mediated Transformation of Javanica Rice cv. Rojolele. Biosci Biotechnol Biochem. 68(6): 1193-200.
12. Witjaksono and Litz RE. (2004) Effect of gamma irradiation on embryogenic avocado cultures and somatic embryo development. Plant Cell Tiss Organ Cult 77: 139–147.
13. Setyadjit, Joyce DC, Irving DE and Simons DH. (2004) Development and senescence of Grevillea ‘Sylvia’ inflorescences, flowers and flower parts. Plant Growth Regul 44: 133–146.
14. Iskandar HM, Simpson RS, Casu RE, Bonnet GD, Maclean DJ and Manners JM. (2004) Comparison of Reference Genes for Quantitative Real-Time Polymerase Chain Reaction Analysis of Gene Expression in Sugarcane. Plant Mol Biol Rep 22: 325-337.
15. Miftahudin, Scoles GJ and Gustafson JP. (2004) Development of PCR-based codominant markers flanking the Alt3 gene in rye. Genome 47: 231–238.
16. Satoh M, Kubo T, Nishizawa S, Estiati A, Itchoda N and Mikami T. (2004) The cytoplasmic male-sterile type and normal type mitochondrial genomes of sugar beet share the same complement of genes of known function but differ in the content of expressed ORFs. Mol Gen Genomics 272: 247–256.
17. Gafur A, Schutzendubel A, Langenfeld-Heyser R, Fritz E, and Polle A. (2004) Compatible and Incompetent Paxillus involutus Isolates for Ectomycorrhiza Formation in vitro with Poplar (Populus × canescens) Differ in H2O2 Production. Plant Biol 6: 91–99.
18. George MLC, Regalado E, Li W, Cao M, Dahlan M, Pabendon M, Warburton L, Xianchun X and Hoisington D. (2004) Molecular characterization of Asian maize inbred lines by multiple laboratories. Theor Appl Genet 109: 80–91.
19. Voorrips RE, Finkers R, Sanjaya L and Groenwold R. (2004) QTL mapping of anthracnose (Colletotrichum spp.) resistance in a cross between Capsicum annuum and C. chinense. Theor Appl Genet 109: 1275–1282.
20. Miftahudin, Chikmawati T et al. (2004) Analysis of Expressed Sequence Tag Loci on Wheat Chromosome Group 4. Genetics 168: 651-663.
21. George MLC, Prasanna BM, Rathore RS, Setty TAS, Kasim S, Azrai M, Vasal S, Balla O, Hautea D, Canama A, Regalado E, Vargas M, Khairallah M, Jeffers D and Hoisington D. (2003) Identification of QTLs conferring resistance to downy mildews of maize in Asia. Theor Appl Genet 107:544–551.
22. Septiningsih EM, Prasetiyono J, Lubis E, Tai TH, Tjubaryat T, Moeljopawiro S and McCouch SR. (2003) Identification of quantitative trait loci for yield and yield components in an advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O. rufipogon. Theor Appl Genet 107:1419–1432.
23. Maryani MM, Morse MV, Bradley G, Irving HR, Cahill DM and Gehring CA. (2003) In situ localization associates biologically active plant natriuretic peptide immuno-analogues with conductive tissue and stomata. J Exp Bot 54(387): 1553-1564.
24. Sugiharto B, Ermawati N, Mori H, Aoki K, Yonekura-Sakakibara K, Yamaya T, Sugiyama T, Sakakibara H. (2002) Identification and characterization of a gene encoding drought-inducible protein localizing in the bundle sheath cell of sugarcane. Plant Cell Physiol 43: 350–354.
25. Iwakawa H, Ueno Y, Semiarti E, Onouchi H,  Kojima S, Tsukaya H, Hasebe M, Soma T, Ikezaki M, Machida C and Machida Y. (2002) The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for formation of a symmetric flat leaf lamina, encodes a member of a novel family of proteins characterized by cysteine repeats and a leucine zipper. Plant Cell Physiol 43: 467–478.
26. Morris LL, Walck JL and Hidayati SN. (2002) Growth and Reproduction of the Invasive Ligustrum sinense and Native Forestiera ligustrina (Oleaceae): Implications for the Invasion and Persistence of a Nonnative Shrub. Int J Plant Sci 163(6):1001–1010.
27. Yatabe Y, Darnaedi D and Murakami N. (2002) Allozyme analysis of cryptic species in the Asplenium nidus complex from West Java, Indonesia. J Plant Res 115: 483–490.
28. Eeuwens CJ, Lord S, Donough CR, Rao V, Vallejo G, Nelson S. (2002) Effects of tissue culture conditions during embryoid multiplication on the incidence of “mantled” flowering in clonally propagated oil palm. Plant Cell Tiss Organ Cult 70: 311–323.
29. Kartosentono S, Indrayanto G and Zaini NC. (2002) The uptake of copper ions by cell suspension cultures of Agave amaniensis, and its effect on the growth, amino acids and hecogenin content. Plant Cell Tiss Organ Cult 68: 287–292.
30. Bahrun A, Jensen CR, Asch F and Mogensen VO. (2002) Drought-induced changes in xylem pH, ionic composition, and ABA concentration act as early signals in field-grown maize (Zea mays L.). J Exp Bot 53(367): 251-263.
31. Semiarti E, Onouchi H, Torikai S, Ishikawa T,  Machida Y  and Machida C. (2001) The transposition pattern of the Ac element in tobacco cultured cells. Genes Genet Syst 76: 131–139.
32. Semiarti E, Ueno Y, Tsukaya H, Iwakawa H, Machida C and Machida Y. (2001) The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana regulates lamina formation, establishment of venation and repression of meristem-related homeobox genes in the leaf. Development 128: 1771-1783.
33. Collonnier C, Fock I, Kashyap V, Rotino GL, Daunay MC, Lian Y, Mariska IK, Rajam MV, Servaes A, Ducreux G and Sihachakr D. (2001) Applications of biotechnology in eggplant. Plant Cell Tiss Organ Cult 65: 91–107.
34. Purba AR, Flori A, Baudouin L and Hamon S. (2001) Prediction of oil palm (Elaeis guineensis, Jacq.) agronomic performances using the best linear unbiased predictor (BLUP). Theor Appl Genet 102: 787–792.
35. Zheng SJ, Henken B, Sofiari E, Jacobsen E, Krens FA and Kik C. (2001) Molecular characterization of transgenic shallots (Allium cepa L.) by adaptor ligation PCR (AL-PCR) and sequencing of genomic DNA flanking T-DNA borders. Transgen Res 10: 237–245.
36. Indrayanto G, Zumaroh S, Syahrani A and Wilkins AL. (2001) C-27 and C-3 Glucosylation of Diosgenin by Cell Suspension Cultures of Costus Speciosus. J Asian Nat Pro Res 3(2): 161-168.
37. Santosa DA. (2001) Rapid extraction and purification of environmental DNA for molecular cloning applications and molecular diversity studies. Mol Biotechnol 17(1): 59-64.
38. Santoso D and Thornburg RW. (2000) Fluoroorotic acid-selected Nicotiana plumbaginifolia cell lines with a stable thymine starvation phenotype have lost the thymine-regulated transcriptional program. Plant Physiol 123: 1517–1524.
39. Purba AR, Noyer JL, Baudouin L, Perrier X, Hamon S and Lagoda PJL. (2000) A new aspect of genetic diversity of Indonesian oil palm (Elaeis guineensis Jacq.) revealed by isoenzyme and AFLP markers and its consequences for breeding. Theor Appl Genet 101:956–961.
40. Rukayadi Y, Suwanto A, Tjahjono B and Harling R. (2000) Survival and Epiphytic Fitness of a Nonpathogenic Mutant of Xanthomonas campestris pv. Glycines. Appl Environ Microbiol. 66(3): 1183–1189.

Sebelum Tahun 2000

1. Andrijany VS, Indrayanto G and Soehono LA. (1999) Simultaneous effect of calcium, magnesium, copper and cobalt ions on sapogenin steroids content in callus cultures of Agave amaniensis. Plant Cell Tiss Organ Cult 55: 103–108.
2. Santoso D and Thornburg RW. (1998) Uridine 5′-monophosphate synthase is transcriptionally regulated by pyrimidine levels in Nicotiana plumbaginifolia. Plant Physiol 116: 815–821.
3. Hernould M, Suharsono S, Zabaleta E, Carde JP, Litvak S, Araya A and Mouras A. (1998) Impairment of tapetum and mitochondria in engineered male-sterile tobacco plants. Plant Mol Biol 36(4): 499-508.
4. Zheng S, Henken B, Sofiari E, Jacobsen E, Krens FA and Kik C. (1998) Factors influencing induction, propagation and regeneration of mature zygotic embryo-derived callus from Allium cepa. Plant Cell Tiss Organ Cult 53: 99–105.
5. Sugiharto B, Sakakibara H,  Sumadi and Sugiyama T. (1997) Differential Expression of Two Genes for Sucrose-Phosphate Synthase in Sugarcane: Molecular Cloning of the cDNAs and Comparative Analysis of Gene Expression. Plant Cell Physiol 38(8): 961-965.
6. Daniel S. Mesquita GD, Shaw J, Grimbergen JA, Buys MA, Dewi L and , Woldringh CL. (1997) Vacuole Segregation in the Saccharomyces cerevisiae vac2-1 Mutant: Structural and Biochemical Quantification of the Segregation Defect and Formation of New Vacuoles. Yeast 13: 999–1008.
7. Hayati R, Egli DB and Crafts-Brandner SJ. (1996) Independence of nitrogen supply and seed growth in soybean: studies using an in vitro culture system. J Exp Bot 47(294): 33-40.
8. Simanungkalit RDM, Roughley RJ, Hastuti RD, Indrasumunar A, Pratiwi E (1996) Inoculation of soybean with selected strains of B. japonicum can increase yield on acid soils in Indonesia. Soil Biol and Biochem 28: 257-259.
9. Koyama H, Toda T, Yokota S, Dawair Z and Hara T. (1995) Effects of Aluminum and pH on Root Growth and Cell Viability in Arabidopsis thaliana Strain Landsberg in Hydroponic Culture. Plant and Cell Physiol 36(1): 201-205.
10. Suwignyo RA, Nose A, Kawamitsu Y, Tsuchiya M and Wasano K. (1995) Effects of Manipulations of Source and Sink on the Carbon Exchange Rate and Some Enzymes of Sucrose Metabolism in Leaves of Soybean [Glycine max (L.) Merr.]. Plant and Cell Physiol 36(8): 1439-1446.
11. Goenadi DH and Sudharama IM. (1995) Shoot initiation by humic acids of selected tropical crops grown in tissue culture. Plant Cell Rep 15:59-62.
12. Simanungkalit RDM, Indrasumunar A, Pratiwi E, Hastuti RD, Roughley RJ (1995) Population dynamics of soybean root-nodule bacteria in Latosol soil used for upland and lowland rice/soybean cropping systems in West Java, Indonesia. Soil Biol and Biochem 27: 625-628.
13. Ermayanti TM, McComb JA and O’Brien PA. (1994) Growth and swainsonine production of Swainsona galegifolia (Andr.) R. Br. untransformed and transformed root cultures. J Exp Bot 45(5): 633-639.
14. Darnetty, Leslie JF, Muthukrishnan S, Swegle M, Vigers AJ and Selitrennikoff CP. (1993) Variability in antifungal proteins in the grains of maize, sorghum and wheat. Physiol Planta 88(2): 339-349.
15. Ermayanti TM, McComb JA and O’Brien PA. (1993) Cytological Analysis of Seedling Roots, Transformed Root Cultures and Roots Regenerated from Callus of Swainsona galegifolia (Andr.) R. Br. J Exp Bot 44(2): 375-380.
16. Hairiah K, Noordwijk M, Stulen I and Kuiper PJC. (1992) Aluminium avoidance by Mucuna pruriens. Physiol Planta 86(1): 17-24.
17. Sugiharto B, Burnell JN and Sugiyama T. (1992) Cytokinin Is Required to Induce the Nitrogen-Dependent Accumulation of mRNAs for Phosphoenolpyruvate Carboxylase and Carbonic Anhydrase in Detached Maize Leaves. Plant Physiol 100:153-156.
18. Peoples MB, Atkins CA, Pate JS, Chong K, Faizah AW, Suratmini P, Nurhayati DP, Bagnall DJ and  Bergersen FJ. (1991) Re-evaluation of the role of ureides in the xylem transport of nitrogen in Arachis species. Physiol Planta 83(4): 560-567.
19. Nakagawa S, Tjokrokusumo DS, Sakurai A, Yamaguchi I, Takahashi N and Syono K. (1987) Endogenous Levels of Gibberellins, IAA and Cytokinins in Tobacco Crown Gall Tissues of Different Morphologies. Plant and Cell Physiol 28(3): 485-493.
20. Arigayo S, Fujisawa S, Sakurai A, Kamiya Y, Adisewojo SS and Takahashi N. (1984) Fluctuation of Endogenous Levels of Free and Conjugated Gibberellins throughout Seed Maturation in Leucaena leucocephala (Lmk) De Wit. Plant and Cell Physiol 25(8): 1395-1402.